Your first couple of points can't even be termed "points"...they're just silliness. Just because B.J. was running the plays that he was given to execute doesn't make him a running qb. He's far from a running threat, so I'm not quite sure why you're comparing him to Boyd.
As for my opinion, I can see either B.J. or Mr. Crompton as our field general in the fall. They both have the tools and Jonathon is hands down the most physically talented of the three. However, we all know that it's his mind that needed the overhaul. I think with everything changing, by the time summer practice rolls around it'll be just the fresh start that Jon needed (not to mention CJC has been known to mold a qb or two). The O/W game will give us a good measuring stick as to where Jon's psyche is at this point.